2023-03-06
If I don’t want to talk to the person, I say, “I’m an archaeologist.”
If I do want to talk to the person, I also say, “I’m an archaeologist.”
And then I explain that I’m really a behavioral ecologist that focuses on specifically human behavior, drawing on the archaeological record to test models and hypotheses about long term trends and their aggregate effects.
Great Houses
The Question
BE = Microeconomics + Darwin
or, utility maximization where proximate utility contributes to long-term inclusive fitness
or, revealed preferences where preferences are shaped by natural selection
Not as reductionist as it may seem, simply the idea that people’s behaviors are reasonable, that there are reasons why they do what they do.
Two key assumptions:
Sometimes referred to as the “principle of charity” or the “principle of rational accommodation.”
The suitability \(S_i\) of habitat \(i\) is some function of its population density \(D_i\)
\[S_i = Q_i - f(D_i) - C_i\]
where
⚠️ Suitability is a synonym for per capita productivity, though it is also a proxy for inclusive fitness.
Can use this to model habitat selection.
What about scaling effects?
We can’t just brush aside the collective action problem, but…
maybe we can loosen the requirement that \(Q\) remain constant relative to density?
Units of analysis
Project area
Proxies for productivity
Response variables
Model we are using is a Bayesian spatio-temporal count model fit using INLA in R.1
Assumes the response is Poisson distributed:
\[O|E \sim Poisson(E\cdot O)\]
where
\(E\) is the density across the project area multiplied by the area of each watershed, so an expected count, and
\(O\) is the ratio of the observed to the expected count, so values greater than one indicate a count greater than expected.
1. Still trying to wrap my head around this. Just started using this approach about three days ago…
Model specification
Then model \(O\) as a log-linear model:
\[log\,(O) = \alpha + \beta X + u + v + w + \epsilon\]
where \(u, v, w\) are random effects for space, time, and watershed.
Actually includes smooth terms for potential non-linear effects.
Intuition?
We’re not just modeling the locations of great houses, but their level of intensity relative to that of farm or pueblo sites.
And, we are modeling each as a function of the environment.
So, you can think of this model as answering the question: did some amount of historical inertia drive the distribution of great houses over and above environmental productivity?
The archaeological data come from cyberSW, a cyberinfrastructure and collaborative space for conducting interdisciplinary research on and exploring the pre-Hispanic archaeological record of the US Southwest and Northwest Mexico.
SKOPE
Synthesizing Knowledge of Past Environments
Paleo-climate data provided by SKOPE, specifically the PaleoCAR model that regresses modern PRISM data on tree ring widths to hindcast past climates.
Resolution
Room counts and density: The area of a Chaco community is typically assumed to be roughly 150 km2 (based on walking speed), but the HUC10 watersheds used in this analysis are 2 or 3 times larger than that.
Uncertainty: Extremely difficult to measure our uncertainty around room count and density estimates.
Environmental smoothing: Aggregating climate variables to the watershed level may bias our estimates of environmental productivity.
Trade-off: Using higher-resolution lattice data may capture more environmental variation, but it also increases the number of zero counts.
Measurement
Sampling intensity: Archaeological data mostly come from cultural resource compliance, which is in turn driven by federal projects, and those tend to happen more in some areas than others.
Data integration: Naming conventions and measurement standards are - let’s say - inadequate in archaeology. That makes aggregating and comparing data in large regional analyses difficult. Can account for some of this using hierarchical models but only if the variance across projects and regions is systematic.
Worth noting that many of the problems archaeologists face are structurally similar to those that ecologists wrestle with, so it’s not like archaeologists are just out on a limb.
⚠️ These results are preliminary. Still experimenting with tuning the priors and other hyperparameters.
Temporal Random Effects
Spatial Random Effects
Partial Dependence
What happens to population growth when a great house is constructed?
Can answer this with an interrupted-time series model.
Year 0 is the first great house construction date for each watershed
Year 0 is the first great house construction date for each watershed